Repositories list

• testing_bias

  Public
  R

  •1•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• hiv-model-eswatini

  Public
  HIV mdelling project on intersections of risk (FSW) & intervention (ART) heterogeneity based on Eswatini

  hivdeterministicincidence+ 6sub-saharan-africaheterogeneitysex-workcompartmental-modeljk-phdantiretroviral-therapy

  Python

  •1•0•1•0•Updated Oct 21, 2024Oct 21, 2024

• mpox-model-network

  Public
  Network chain binomial model of mpox transmission

  R

  •1•1•0•0•Updated Aug 19, 2024Aug 19, 2024

• COVID-SDOHmobility

  Public
  An observational study of mobility changes following COVID-19 stay-at-home policies varied by socioeconomic measures in Ontario, Canada

  R

  •0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

• duration-biases-sex-data

  Public
  paper + code on biases + adjustments related to durations (groups + partnerships)

  R

  •0•1•0•0•Updated Mar 13, 2024Mar 13, 2024

• epa-model-toy

  Public
  toy model of Effective Partnerships Adjustment

  Python

  •0•0•0•0•Updated Oct 6, 2023Oct 6, 2023

• mpox-model-compartmental

  Public
  R

  •0•0•0•0•Updated Apr 30, 2023Apr 30, 2023

• imbalanced-contact-matrices

  Public
  Study to assess the effect of imbalanced social contact matrices on infectious disease dynamics

  R

  •1•0•0•0•Updated Aug 3, 2022Aug 3, 2022

• sr-heterogeneity-hiv-models

  Public
  scoping review of heterogeneity and mixing in dynamical models of HIV transmission [JK PhD]

  reviewassumptionsepidemics+ 6hivdeterministicsub-saharan-africaheterogeneitycompartmental-modelantiretroviral-therapy

  TeX

  •0•1•17•0•Updated Jul 7, 2022Jul 7, 2022

• age-patch-mobility-mixing

  Public
  Deriving contact patterns for age & patch mixing, based on recurrent mobility data

  social-networkinfectious-disease-modelscovid-19

  R

  •0•0•3•0•Updated Dec 27, 2021Dec 27, 2021

• cihr-multiprovince-covid-project

  Public
  R

  •0•0•0•0•Updated Jul 15, 2021Jul 15, 2021

• covid-r

  Public
  Estimating the effective reproduction number Re(t) for COVID19 in GTA, Canada

  torontoassumptionscovid-19+ 1reproduction-number

  R

  •0•4•0•0•Updated Jun 23, 2021Jun 23, 2021

• scheduler

  Public
  An on-call scheduling tool for clinicians

  guioptimizationscheduling+ 4pyqt5linear-programmingcliniciansnurse-scheduling

  TeX

  •1•2•6•1•Updated Feb 10, 2021Feb 10, 2021

• covid-GTA-surge-planning

  Public
  COVID-19 Healthcare Surge Model for Greater Toronto Area Hospitals

  shinymodelingtoronto+ 3surgeepidemicscovid-19

  R

  •

  MIT License

  •4•2•1•0•Updated Nov 26, 2020Nov 26, 2020

• turnover

  Public
  turnover in epidemic models: a unified framework and exploring the influence on model outputs

  modellingassumptionsepidemics+ 2deterministiccompartmental-model

  Python

  •0•0•8•0•Updated Aug 5, 2020Aug 5, 2020

• tb-nlp-rulesets

  Public
  Rulesets for TB-related Information Extraction from Unstructured Clinical Dictations

  nlpinformation-extractionruleset+ 1tuberculosis

  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 23, 2020Jul 23, 2020

• covid-GTA-surge-planning-reports

  Public
  Please visit the new repository for the COVID-19 Surge Planning project

  datasurgecovid-19

  0•0•0•0•Updated Apr 21, 2020Apr 21, 2020