SMS3 v0.4.25

SMS3 v0.4.25

This release simplifies Sanger analysis and trace controls, and adds local file inspection tools.

• Add Sanger Chromatogram Plot with forward and reverse translations enabled by default and display controls beside the plot.
• Consolidate trace/reference alignment review in Sanger Genotyper and remove Sanger Trace Reference Comparison.
• Focus Sanger Trace Assembly on assembling trimmed reads, with clearer consensus settings.
• Use explicit trimming modes, remove duplicate per-trace controls, and keep base editing inside the trace editor.
• Simplify Sanger output menus and synchronize tool descriptions, catalogs, and workflow outputs.
• Group Genotyper example traces by sample and add directional chevrons to reference coverage plots.
• Add streaming file checksums, manifest verification, and bounded file/archive previews with workflow outputs.

Open the application at https://stothardresearch.ca/sequence-manipulation-suite/.

Validation

• Node: 2,396 passed; 11 existing browser-only skips.
• Chromium: 737 passed in the full run; four stale interface tests passed after correction. All 741 cases were checked against the same public artifact.
• WebKit: 740 passed and one existing Chromium-only native-touch test skipped; zero retries across the full 19-batch gate.
• Portable viewer and Tree Viewer build checks, plus the isolated Tree Viewer package check, passed.

The corrected tests follow the current Sanger trimming modes and dedicated chromatogram tool, preserve typography checks, synchronize the oracle inventory, and measure eager startup imports separately from optional bundles.