Pinned repositories

  1. gbds

    Goal-Based Dynamical System for behavioral data analysis

    Python 3 1

  2. ecogtools

    functions for ecog data analysis

    Jupyter Notebook

  3. spiketopics

    Topic modeling for neural populations

    Jupyter Notebook 1

  • TensorFlow implementation of goal-based dynamical system model

    Python MIT Updated Jul 16, 2018
  • Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 105 GPL-2.0 Updated Jun 26, 2018
  • Lab webpage

    HTML 8 6 Updated Jun 20, 2018
  • Analysis models for Duke Legal Decision Making Survey

    R Updated May 15, 2018
  • Server for piping zebrafish images through CaImAn

    Python Updated Apr 27, 2018
  • John's talk "Systems neuroscience beyond the tuning curve"

    CSS Updated Feb 15, 2018
  • Goal-Based Dynamical System for behavioral data analysis

    Python 3 1 Updated Sep 26, 2017
  • Python scripts for initial data processing of edf files on back-end server

    Python Updated Sep 3, 2017
  • Topic modeling for neural populations

    Jupyter Notebook 1 Updated Aug 21, 2017
  • Python version of go/no-go task

    Python 3 3 MIT Updated Aug 9, 2017
  • Python Updated Aug 2, 2017
  • dot motion task

    Python 1 Updated Jun 9, 2017
  • functions for ecog data analysis

    Jupyter Notebook Updated Apr 24, 2017
  • downloading files from AWS DataPipeline system

    JavaScript 1 Updated Apr 21, 2017
  • uploading files to s3 and storing information in database

    Python Updated Apr 19, 2017
  • John's talk at Duke's CCN, March 2017

    JavaScript MIT Updated Apr 10, 2017
  • Arduino code that converts analog input into digital triggers

    Arduino Updated Apr 7, 2017
  • Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

    Python 124 BSD-3-Clause Updated Feb 17, 2017
  • Slides for my presentation on GitHub to Duke's Center for Cognitive Neuroscience

    MIT Updated Dec 13, 2016
  • Python Updated Nov 29, 2016
  • Python Updated Nov 29, 2016
  • Python Updated Nov 29, 2016
  • John's talk at the 2016 Society for Neuroscience meeting

    JavaScript MIT Updated Nov 13, 2016
  • Matlab and Python code for pupillometry studies.

    Python 11 4 Updated Oct 26, 2016
  • Neuron's Eye View models for latent states in spike trains

    Jupyter Notebook MIT Updated Oct 13, 2016
  • Python Updated Sep 29, 2016
  • Validation analysis and noise assessment for OpenEphy

    Jupyter Notebook MIT Updated Aug 23, 2016
  • Python drivers for RTBox

    Python Updated Jul 26, 2016
  • Working Memory Visual Search Task for PsychoPy

    Python 1 Updated Jul 25, 2016
  • Prototype implementation of a reverse differentiation library in Julia.

    Julia MIT Updated Jul 14, 2016