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OncoRef 1.27.0: simpler decisions and adult Disposable evidence
OncoRef 1.27.0 makes the final decision independent of descriptive evidence attributes.
| Decision | Proteins |
|---|---|
| CTA | 701 |
| Unsafe | 18,062 |
| Other | 453 |
| Unassessed | 647 |
All 701 previous CTAs and all 18,062 previous Unsafe assignments remain. Other now records only the unmet identity requirement: 448 Nonreproductive and 5 Diffuse (Reproductive without cancer currently zero).
cta_selection.profiles() exposes native-unit tumor and normal RNA, tumor replication, measurement support, adult Disposable expression and developmental evidence as independent columns. Replace old Low/Weak/Normal/Tumor-supported/Disposable subtype filters with those attributes. They can overlap without changing the categorical decision.
Disposable designates an allowed adult compartment. The adult Disposable-only expression pattern no longer requires measured/low developmental expression: TCHHL1, LCE3B and LCE3C have the adult pattern among Other proteins, with missing developmental measurements explicitly retained.
The only top-level movement is OR10A4, Other → Unassessed after reviewed adult human nasal/olfactory RNA in two primary studies. Original donor spreadsheets are pinned through the shared cache API at version 2014-05-06. Native qPCR is not converted to TPM or treated as protein/clinical toxicity.
Simple rules, four protein reviews and exact data · Release and migration · Full source report · 37-slide logic PDF · Editable slides · PR #658
Validation: 2,838 local tests passed / 22 skipped; targeted policy/API/species/provenance checks, artifact receipts, strict docs, package builds and built-wheel API passed. Current safety ceilings, known CTA membership and species/reference boundaries are preserved. Historical sequence bundles remain independently versioned; translation QC and rare-normal coverage are separate requirements.