Include query sequences in read_bam_full

[timodonnell]

Fixes #3

[endrebak]

I had actually gotten the sequences in my cython code, but forgotten to include them in my python code.

[endrebak]

0.0.7 out on pypi. Thanks!

Are you using bamread as a standalone library? I guess it isn't very user-friendly, but I thought people would be using it from pyranges so I haven't polished it much.

[timodonnell]

Thanks! Yeah, I've been using it standalone. I think there is space for a reasonably performant way to read BAMs into a pandas dataframe without a big (and ever changing) API like pysam. This project could be that!

[endrebak]

Thanks. If you have suggestions for an API you'd like I'm likely to implement some variation of it.

…

On Wed, Jun 9, 2021 at 6:22 PM timodonnell ***@***.***> wrote: Thanks! Yeah, I've been using it standalone. I think there is space for a reasonably performant way to read BAMs into a pandas dataframe without a big (and ever changing) API like pysam. This project could be that! — You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub <#4 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEHURUQAAOAG7GPYWJORAC3TR6INTANCNFSM45JZZJGQ> .

[timodonnell]

Sure, I'll make a ticket with thoughts on an API