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Command line interface for QIIME 2
Python Other
  1. Python 99.1%
  2. Other 0.9%
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A click-based command line interface for QIIME 2.

Installation and getting help

Visit to learn more about q2cli and the QIIME 2 project.

Enabling tab completion


To enable tab completion in Bash, run the following command or add it to your .bashrc/.bash_profile:

source tab-qiime


To enable tab completion in ZSH, run the following commands or add them to your .zshrc:

autoload bashcompinit && bashcompinit && source tab-qiime
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