Unable to install SF on Fedora 32

[notagoodidea]

Hi,

I am trying to install sf on Fedora 32, all system are updated to the latest version of the repos.
For the dependencies : proj-epsg and proj-nad are not available in the repos.

Trying to install sf in RStudio with install.packages("sf") give me the following output :

configure: CC: gcc -m64
configure: CXX: g++ -m64 -std=gnu++11
checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 3.0.4
checking GDAL version >= 2.0.1... yes
checking for gcc... gcc -m64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -m64 accepts -g... yes
checking for gcc -m64 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -m64 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking gdal.h usability... yes
checking gdal.h presence... yes
checking for gdal.h... yes
checking GDAL: linking with --libs only... yes
checking GDAL: /usr/share/gdal/pcs.csv readable... no
checking GDAL: checking whether PROJ is available for linking:... no
/usr/bin/ld: /tmp/ccslR7kQ.o: relocation R_X86_64_32 against symbol __gxx_personality_v0@@CXXABI_1.3 can not be used when making a PIE object; recompile with -fPIE
collect2: error: ld returned 1 exit status
configure: Install failure: compilation and/or linkage problems.
configure: error: cannot link projection code
ERROR: configuration failed for package ‘sf’

• removing ‘/home/elie/R/x86_64-redhat-linux-gnu-library/3.6/sf’
  Warning in install.packages :
  installation of package ‘sf’ had non-zero exit status

The downloaded source packages are in
‘/tmp/RtmpjecTt8/downloaded_packages’
Warning message:
In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘sf’

rgdal used in another package is perfectly working.

• System : Fedora 32 Beta
• R version : 3.6.3
• RStudio version : 1.2.5033
• Problem : Unable to install sf due to linking problem

Do you need any other informations about that issue?

[rsbivand]

Duplicate of #1369 I think. Do look first, please. Roger Bivand Falsensvei 32 5063 Bergen man. 20. apr. 2020, 17:01 skrev notagoodidea <notifications@github.com>:

…

Hi, I am trying to install sf on Fedora 32, all system are updated to the latest version of the repos. For the dependencies : proj-epsg and proj-nad are not available in the repos. Trying to install sf in RStudio with install.packages("sf") give me the following output : configure: CC: gcc -m64 configure: CXX: g++ -m64 -std=gnu++11 checking for gdal-config... /usr/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.0.4 checking GDAL version >= 2.0.1... yes checking for gcc... gcc -m64 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -m64 accepts -g... yes checking for gcc -m64 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -m64 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking gdal.h usability... yes checking gdal.h presence... yes checking for gdal.h... yes checking GDAL: linking with --libs only... yes checking GDAL: /usr/share/gdal/pcs.csv readable... no checking GDAL: checking whether PROJ is available for linking:... no /usr/bin/ld: /tmp/ccslR7kQ.o: relocation R_X86_64_32 against symbol __gxx_personality_v0@@CXXABI_1.3' can not be used when making a PIE object; recompile with -fPIE collect2: error: ld returned 1 exit status configure: Install failure: compilation and/or linkage problems. configure: error: cannot link projection code ERROR: configuration failed for package ‘sf’ - removing ‘/home/elie/R/x86_64-redhat-linux-gnu-library/3.6/sf’ Warning in install.packages : installation of package ‘sf’ had non-zero exit status The downloaded source packages are in ‘/tmp/RtmpjecTt8/downloaded_packages’ Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘sf’` rgdal used in another package is perfectly working. - System : *Fedora 32 Beta* - R version : *3.6.3* - RStudio version : *1.2.5033* - Problem : *Unable to install sf due to linking problem* Do you need any other informations about that issue? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#1379>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACNZ3BD6RD6S5ZMM2IMBUUTRNRPTBANCNFSM4MMQMYDQ> .