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Enhancements & fixes
- New
--window_sizeparameter to select the size of the windows to compute statistics on.
It replaces the--window_size_infoparameter, which only affected output naming. - Renamed
--selected_fw_outputto to--selected_fasta_windows_outputsfor clarity,
which now has better validation. - Upgraded to the nf-core template v4.2.0
- Slack / Teams functionality now moved to Nextflow plugins (nf-slack, nf-teams)
- Adjusted the resource limits of bgzip, tabix, and fastawindows to accommodate a wide range
of genome size, up to 95 Gbp.
Parameters
| Old parameter | New parameter |
|---|---|
--window_size_info |
--window_size |
--selected_fw_output |
--selected_fasta_windows_outputs |
NB: Parameter has been updated if both old and new parameter information is present.
NB: Parameter has been added if just the new parameter information is present.
NB: Parameter has been removed if new parameter information isn't present.