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@mojaveazure mojaveazure released this 24 May 16:36
· 2186 commits to master since this release
v4.0.2
af2925c
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Changes

  • Preserve feature metadata when converting from SingleCellExperiment to SeuratObject class
    (#4205)
  • Preserve multiple assays when converting from SingleCellExperiment to SeuratObject class
    (#3764)
  • Fix passing of score.thresh parameter in ScoreJackStraw() (#4268)
  • Fix FC calculation in FindMarkers() non-log transformed data.
  • Add umap-learn version >= 0.5.0 compatibility for RunUMAP()
  • Fix DotPlot to use log1p when scale=False
    (#4298)
  • Fix split and shuffled DimPlot
  • Disallow NULL or another length 0 vector for ident.1 in FindMarkers()
  • Fix range shift when labeling clusters on a GeomSpatial plot
  • Fix SpatialPlot distortion for non-square images.
  • Fix future-related warnings in FindIntegrationAnchors()
  • Fix fc.name parameter in FindMarkers() (#4474)
  • Deprecate group.by parameter in PlotPerturbScore() in favor of mixscape.class.

Additions

  • New AddAzimuthScores() and AddAzimuthResults() functions
  • Add shuffle parameter to FeatureScatter() (#4280)
  • Add lsiproject and rpca options for FindTransferAnchors()
  • Add rlsi option for FindIntegrationAnchors()
Assets 2