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Deepfinder plugin for Scipion

Deepfinder provides a deeplearning picking workflow for cryoelectron microscopy tomography data.

Setup

  • Install this plugin in devel mode:

Using the command line:

scipion3 installp -p local/path/to/scipion-em-deepfinder --devel

Plugin integration

The following steps presuppose that you have Anaconda or Miniconda installed on your computer. In ~/.config/scipion/scipion.conf (Option View > Show Hidden Files must be enabled) set CONDA_ACTIVATION_CMD variable in the Packages section.

For example:

CONDA_ACTIVATION_CMD = . ~/anaconda3/etc/profile.d/conda.sh

Video tutorials

A playlist was created in I2PC Youtube channel to show how to use Deepfinder plugin in Scipion.

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Scipion plugin for deepfinder (tomography picker)

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