Skip to content
master
Switch branches/tags
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Resmap plugin

This plugin provides a wrapper for ResMap program.

build status

Installation

You will need to use 3.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:

  1. Stable version
scipion installp -p scipion-em-resmap
  1. Developer's version

    • download repository
    git clone https://github.com/scipion-em/scipion-em-resmap.git
    
    • install
    scipion installp -p path_to_scipion-em-resmap --devel
    

ResMap binaries will be installed automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/resmap-1.95, if you want to change it, set RESMAP_HOME in scipion.conf file pointing to the folder where the ResMap is installed. ResMap binary (default ResMap-1.95-cuda-Centos7x64) and CUDA lib module (default ResMap_krnl-cuda-V8.0.61-sm60_gpu.so) can be set by RESMAP and RESMAP_GPU_LIB vars, respectively. You also might need to set RESMAP_CUDA_LIB in the config file pointing to the correct location of system CUDA libraries.

To check the installation, simply run the following Scipion test: scipion test resmap.tests.test_protocols_resmap.TestResMap

A complete list of tests can also be seen by executing scipion test --show --grep resmap

Supported versions

1.95

Protocols

  • local resolution

References

  1. Kucukelbir A. et al. (2014) Quantifying the local resolution of cryo-EM density maps. Nature Methods 11, 63-65.

About

Plugin to use Resmap programs within the Scipion framework

Resources

License

Packages

No packages published

Languages