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ci: clean up #3782

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Merged
merged 3 commits into from
Sep 2, 2025
Merged

ci: clean up #3782

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b5400be
clean up ci
flying-sheep Sep 2, 2025
c1984a8
numba skip
flying-sheep Sep 2, 2025
c4c4fa9
combine
flying-sheep Sep 2, 2025
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5 changes: 4 additions & 1 deletion .github/workflows/ci.yml
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Expand Up @@ -75,7 +75,10 @@ jobs:
run: uvx hatch run ${{ matrix.env.name }}:run
- name: Run tests (coverage)
if: matrix.env.test-type == 'coverage'
run: uvx hatch run ${{ matrix.env.name }}:run-cov --cov --cov-report=xml
run: |
uvx hatch run ${{ matrix.env.name }}:run-cov
uvx hatch run ${{ matrix.env.name }}:coverage combine
uvx hatch run ${{ matrix.env.name }}:coverage xml

- name: Upload coverage data
uses: codecov/codecov-action@v5
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4 changes: 2 additions & 2 deletions pyproject.toml
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Expand Up @@ -61,7 +61,7 @@ dependencies = [
"networkx>=2.8.8",
"natsort",
"joblib",
"numba>=0.58.1",
"numba >=0.58.1, !=0.62.0rc1", #https://github.com/numba/numba/issues/10202
"umap-learn>=0.5.7",
"pynndescent>=0.5.13",
"packaging>=21.3",
Expand All @@ -87,7 +87,7 @@ scanpy = "scanpy.cli:console_main"
test-min = [
"pytest>=8.2",
"pytest-mock",
"pytest-cov",
"pytest-cov", # only for use from VS Code
"pytest-xdist[psutil]",
"pytest-randomly",
"pytest-rerunfailures",
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