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Easier to execute notebooks #149
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…a-notebooks into fix/notebooks
for more information, see https://pre-commit.ci
…a-notebooks into fix/notebooks
for more information, see https://pre-commit.ci
…a-notebooks into fix/notebooks
for more information, see https://pre-commit.ci
for more information, see https://pre-commit.ci
…a-notebooks into fix/notebooks
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_latest_run_notebook.ipynb
to gitignore to make integration testing more ergonomic (so the latest error is readily available to debug)alignment_using_landmarks.ipynb
notebook and copied utils code to use affine transformations intoalignment_utils.py
napari_rois.ipynb
anddensenet.ipynb
now usealignment_utils.py
densenet.py
now work on the downloadablevisium.zarr
andxenium.zarr
data, without the need to run other notebooks before. Also the plots are improved.xenium_and_visium
will not be tested anymore in the data CI (execution time too long, it slows development turnaround times).