PaintorPipe v2.3

• official 1000 genome project vcf files for hg38 (including unrelated samples)
• corrected few typos in readme and other files

PaintorPipe v2.2

• default 1 cpu for a job
• improved readme file (add information about dag and trace files)
• singularity recipe with small s in file name
• made genome version actually optional
• simplified launch script

PaintorPipe v2.1

• all outputs updated
• documentation for all outputs added
• removed creation of the file all.loci.variant.achieving.50.80.95pcent.sumppri.nb.pcent.txt
• some improvements to the readme file and correction of English

PaintorPipe v2.0

This is a new release with a slightly bigger small dataset and a command line that should work at least on a slurm cluster.
The README file has also been made clearer

PaintorPipe_V1.2

No more duplications during LDCALCULATION process.
New flowchart and logo.
Credible sets (CS95%) added to the pipe.

PaintorPipe_V1.1.1

Bug in the results.nf module fixed.

PaintorPipe_V1.1

The issue regarding the plot of PP in the module result.nf has been rectified.

PaintorPipe_V1.0

Substantial changes : VCF and map files aren't required anymore, a new process download them and give them as an input in the following process. Added parameters check before execution (2 required files and reference genome version). Added new process to merge Paintor results and loci annotations.

PaintorPipe_V0.3

The number of SNP with the best posterior probability and the posterior probability threshold can be choosen.
The main.py script was modified to main_V2.py to correct the overlapping loci issue.
Added headers parameters to the main.nf script.

PaintorPipe_V0.2

Canvis parallelised with combined channels.
Locus IDs are taken into account in the channels.