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BABAPPAlign v1.0.5

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@sinhakrishnendu sinhakrishnendu released this 20 Dec 04:42
· 41 commits to main since this release

Performance-optimized release with score-matrix precomputation and a traceback correctness fix.
Neural scoring is now computed once per profile–sequence alignment and reused throughout dynamic programming, yielding large speedups without accuracy loss.
This release fixes a Profile bookkeeping bug introduced during optimization and preserves full backward CLI compatibility.