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Coding to music
🎶
Coding to music

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sirselim/README.md

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👋 Hi there! I'm Miles

I'm a bioinformatician / computational geneticist based in New Zealand. I am the Associate Director of the APAC Applications Project Support team at Oxford Nanopore Technologies. I also dabble at photography and guitar, with a side of coffee, beer and single malts in the mix.

I have written and maintiain several documents about GPU compute for Nanopore sequencing that people find helpful, feel free to check them out:

You can find out more about me and connect in different ways below:

Website Twitter ORCID Google Scholar CV




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  1. jetson_nanopore_sequencing jetson_nanopore_sequencing Public

    A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

    106 10

  2. guppy_parameter_optimiser guppy_parameter_optimiser Public

    A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate

    Shell 31 4

  3. illumina450k_filtering illumina450k_filtering Public

    A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays

    27 24

  4. a collection of my notes while worki... a collection of my notes while working on nanopore basecalling on the Jetson Xavier
    1
    # Jetson Xavier basecalling notes
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    3
    ## initial basecalling runs 
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    5
    #### 'fast' flip-flop calling on the Jetson Xavier
  5. diagnostics_exome_reporting diagnostics_exome_reporting Public

    Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.

    Shell 13 10

  6. WES_ShinyDiscover WES_ShinyDiscover Public

    A Shiny interface to filter and identify variants of interest from whole exome data

    CSS 8 5