• Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

    C++ 41 8 BSD-3-Clause Updated Aug 20, 2018
  • Squeakr: An Exact and Approximate k -mer Counting System

    C++ 56 15 BSD-3-Clause Updated Aug 18, 2018
  • A General-Purpose Counting Filter: Counting Quotient Filter

    C 65 10 BSD-3-Clause Updated Aug 18, 2018
  • Space-Efficient, High-Performance Rank & Select Structures on Uncompressed Bit Sequences

    C++ 8 12 Updated Aug 8, 2018
  • deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph

    C++ 25 1 BSD-3-Clause Updated Nov 9, 2017
  • KMC

    Forked from refresh-bio/KMC

    Fast and frugal disk based k-mer counter

    C++ 24 Updated Jul 30, 2017
  • Sux

    Forked from foudrer/Sux

    Implementing Succinct Data Structures from Sebastiano Vigna(http://sux.di.unimi.it)

    C++ 2 4 LGPL-3.0 Updated Apr 29, 2017
  • Succinct Data Structure Library 2.0

    C++ 2 207 Updated Jan 30, 2017
  • The main purpose of the FireHose Streaming Benchmarks is to enable comparison of streaming software and hardware, both quantitatively vis-a-vis the rate at which they can process data, and qualitatively by judging the effort involved to implement and run the benchmarks.

    C++ 6 Updated Dec 20, 2016