v2.10.0

• bamcountrefs now supports multithreading
• Added --length output option to bamcountrefs
• bamtocov now handles Ctrl-C/Ctrl-D gracefully in streams
• Optimized bamcountrefs and refactored bamtocounts
• Added DisCov (merenlab) integration to bamcountrefs
• Fixed paired-end fragment counting in bamtocounts
• Bug fixes since 2.9 (grouped under 2.10.0)
  • bamtocounts: fixed overlap predicate for exact matches and boundary cases
  • bamtocounts: fixed RPKM denominator to account for MAPQ/flag/paired-read filtering
  • bamtocov: fails gracefully when target contigs are missing from BAM/CRAM headers
  • bamtocov: preserves target-file order in reports
  • bamtocov: fixed extra empty column in stranded quantized BED output
  • bamtocov: fixed WIG span state leakage across contigs in stranded mode
  • bamtocov: replaced deprecated output destructor with explicit flush