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Data Sources
Kal Grimes edited this page Sep 24, 2026
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1 revision
Here documents the different datasets used as part of the benchmarking.
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/024/SRR30521524/SRR30521524_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/024/SRR30521524/SRR30521524_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/023/SRR30521523/SRR30521523_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/023/SRR30521523/SRR30521523_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/031/SRR30521531/SRR30521531_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/031/SRR30521531/SRR30521531_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/035/SRR30521535/SRR30521535_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/035/SRR30521535/SRR30521535_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/032/SRR30521532/SRR30521532_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/032/SRR30521532/SRR30521532_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/027/SRR30521527/SRR30521527_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/027/SRR30521527/SRR30521527_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/015/SRR30521515/SRR30521515_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/015/SRR30521515/SRR30521515_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/026/SRR30521526/SRR30521526_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/026/SRR30521526/SRR30521526_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/036/SRR30521536/SRR30521536_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/036/SRR30521536/SRR30521536_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/029/SRR30521529/SRR30521529_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/029/SRR30521529/SRR30521529_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/034/SRR30521534/SRR30521534_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/034/SRR30521534/SRR30521534_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/010/SRR30521510/SRR30521510_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/010/SRR30521510/SRR30521510_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/014/SRR30521514/SRR30521514_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/014/SRR30521514/SRR30521514_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/022/SRR30521522/SRR30521522_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/022/SRR30521522/SRR30521522_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/016/SRR30521516/SRR30521516_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/016/SRR30521516/SRR30521516_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/021/SRR30521521/SRR30521521_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/021/SRR30521521/SRR30521521_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/028/SRR30521528/SRR30521528_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/028/SRR30521528/SRR30521528_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/030/SRR30521530/SRR30521530_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/030/SRR30521530/SRR30521530_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/018/SRR30521518/SRR30521518_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/018/SRR30521518/SRR30521518_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/012/SRR30521512/SRR30521512_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/012/SRR30521512/SRR30521512_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/017/SRR30521517/SRR30521517_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/017/SRR30521517/SRR30521517_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/020/SRR30521520/SRR30521520_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/020/SRR30521520/SRR30521520_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/013/SRR30521513/SRR30521513_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/013/SRR30521513/SRR30521513_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/025/SRR30521525/SRR30521525_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/025/SRR30521525/SRR30521525_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/033/SRR30521533/SRR30521533_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/033/SRR30521533/SRR30521533_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/011/SRR30521511/SRR30521511_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/011/SRR30521511/SRR30521511_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/019/SRR30521519/SRR30521519_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/019/SRR30521519/SRR30521519_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/078/ERR13636778/ERR13636778_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/078/ERR13636778/ERR13636778_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/076/ERR13636776/ERR13636776_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/076/ERR13636776/ERR13636776_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/075/ERR13636775/ERR13636775_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/075/ERR13636775/ERR13636775_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/074/ERR13636774/ERR13636774_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/074/ERR13636774/ERR13636774_2.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/077/ERR13636777/ERR13636777_1.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/077/ERR13636777/ERR13636777_2.fastq.gz
TBD
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/001/ERR9830861/ERR9830861.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/006/ERR9830856/ERR9830856.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/003/ERR9830873/ERR9830873.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/001/ERR9830871/ERR9830871.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/006/ERR9830866/ERR9830866.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/004/ERR9830854/ERR9830854.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/005/ERR9830865/ERR9830865.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/002/ERR9830852/ERR9830852.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/000/ERR9830870/ERR9830870.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/002/ERR9830862/ERR9830862.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/001/ERR9830851/ERR9830851.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/000/ERR9830850/ERR9830850.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/008/ERR9830858/ERR9830858.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/007/ERR9830857/ERR9830857.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/008/ERR9830868/ERR9830868.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/007/ERR9830847/ERR9830847.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/002/ERR9830872/ERR9830872.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/000/ERR9830860/ERR9830860.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/008/ERR9830848/ERR9830848.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/005/ERR9830875/ERR9830875.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/009/ERR9830849/ERR9830849.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/003/ERR9830853/ERR9830853.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/006/ERR9830876/ERR9830876.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/009/ERR9830869/ERR9830869.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/004/ERR9830874/ERR9830874.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/009/ERR9830859/ERR9830859.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/005/ERR9830855/ERR9830855.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/004/ERR9830864/ERR9830864.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/007/ERR9830867/ERR9830867.fastq.gz
- ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR983/003/ERR9830863/ERR9830863.fastq.gz
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