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v0.9.5
This release adds new features and fix some minor bugs
The addition of the new features required to modify and update the germline pre-processing scripts to implement dragen VCFs pre-processings
New Features
- processing
VCFfrom two new tools:dragen_snvanddragen_sv; These tools are part of theIllumina Dragen Pipeline; - remove duplicated lines from
dragen_svtool using an external tool implemented in python3 (main_dedup_sv.py ; needs to be in the PATH)
Bugs fixed
- fix keyError bug: replace data[0] with data[tool]
- replace cp with rsync
- check the
stepvalue that update the counter is correctly assigned when the total count of variant from the union of all the VCF is less than 10 variants - Fix
indelsfiltering out with Phaser; Encountered edge cases; fix issue #27.