16S Microbiome Analysis Pipeline. This version written in Nextflow.
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Updated
Sep 29, 2020 - Shell
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16s
Here are 7 public repositories matching this topic...
Comparing 3 different metagenomics approaches with ONT's long read sequencing method
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Dec 21, 2022 - Shell
rRNADif is a method to measure intragenomic 16S rRNA variability within the desired genome sequence against a chosen set of organisms. The app is calculating ML phylogenetic tree and uses mean/median branch length within a set of 16S rRNA as a measure of variability between them
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Feb 2, 2021 - Shell
rRNADif is a method to measure intragenomic 16S rRNA variability within the desired genome sequence against a chosen set of organisms. The app is calculating ML phylogenetic tree and uses mean/median branch length within a set of 16S rRNA as a measure of variability between them
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Updated
Feb 2, 2021 - Shell
This repository provides scripts for the 16S microbiome analysis and metagenome prediction using linux and R-Studio
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Updated
Oct 16, 2023 - Shell
Simple script to generate Krona charts for all samples in an OTU table file
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Updated
Dec 7, 2018 - Shell
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