A cool place to store your Hi-C
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Updated
May 13, 2024 - Python
A cool place to store your Hi-C
Accurate and flexible loops calling tool for 3D genomic data.
flexible suite of CLI tools for contact extraction (.pairs) from sequencing data (Hi-C, Micro-C and other chromosome capture methods)
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder
multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
Data and the co-authored network I extracted for lab selection in 3D genome research field
3DGB is a workflow to build 3D models of genomes from HiC data
Transformer-based model to predict genome-wide chromosome spatial position
FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data
A Web-Server implementation of ParticleChromo3D for 3D chromosome structure reconstruction
Script to cluster Paired End Tags (PETs) from chromatin conformation capture (3C) experiments
nuclear compartmentalization, 3D genome, nuclear bodies, MRF
Deep Learning of Sequence Patterns for CTCF-Mediated Chromatin Loop Formation
DeepLncCTCF for identification and analysis of consensus RNA motifs binding to the genome regulator CTCF
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