Here are
31 public repositories
matching this topic...
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Updated
Jul 7, 2022
Python
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
Updated
Jun 17, 2024
Python
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Updated
Jun 16, 2022
Python
ISOform-guided prediction of epiTOPEs in cancer
Updated
Apr 10, 2023
Python
Docker to run rMATS for splicing quantification and analysis
Updated
Mar 21, 2019
Python
Computational biology pipeline that quantifies RNA splicing and performs sQTL mapping
Updated
Apr 29, 2018
Python
Docker to run MISO for splicing quantification and analysis
Updated
Jul 18, 2017
Python
Use Thor's Axe to cut exons into their evolutionary building blocks ⚡
Updated
Jun 14, 2024
Python
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
Updated
Jun 14, 2022
Python
A network-based approach for exon set enrichment
Updated
Apr 18, 2024
Python
SimSpliceEvol: Alternative splicing-aware simulation of biological sequence evolution
Updated
Jun 21, 2024
Python
Reading Genomic Files and provide data as API
Updated
Feb 9, 2017
Python
Dynamic Isoform spliCing Estimator via sequencing data
Updated
Jun 9, 2020
Python
⚔️Find splicing-led, functional changes of the proteome.
Updated
Jun 18, 2019
Python
A supervised methodology for analyzing dysregulation in splicing machinery: an application in cancer diagnosis.
Updated
Oct 17, 2019
Python
Docker to run SUPPA for splicing quantification and analysis
Updated
Jul 18, 2017
Python
Performing Cancer Diagnosis via an Isoform Level Expression Ranking-based LSTM Model
Updated
Nov 4, 2019
Python
Updated
Jun 17, 2024
Python
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
Updated
May 4, 2022
Python
Snakemake pipeline for alternative slicing analysis with VAST-TOOLS
Updated
Feb 15, 2024
Python
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