Substitution Profiles Using Related Families
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Updated
Aug 2, 2018 - Python
Substitution Profiles Using Related Families
Python package for analysis of antibody heavy and light chains
Quality control scripts for AIRR-seq data
A quick script that uses biopython to determine which residues are bound from an antibody to an antigen within a PDB file.
This repository contains the NbX models for the re-ranking of nanobody–antigen binding poses.
Unofficial re-implementation of IgFold, a fast antibody structure prediction method, in PyTorch.
Protein design tools as PyMOL plugin
A Collection of Platform, Tools, and Resources for Antibody Engineering
An unofficial re-implementation of DeepAb, an interpretable deep learning model for antibody structure prediction.
PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
An unofficial re-implementation of DiffAb, a diffusion-based generative model for antigen-specific antibody design and optimization.
Inference code for BALM
Probe and cluster antibody paratopes and clonotypes
Official repository for discrete Walk-Jump Sampling (dWJS)
Material to run the HADDOCK antibody-antigen modelling protocol
Antibody CDR loop conformation clusteirng using Affinity Propagation
The official implementation of "Improving Antibody Humanness Prediction using Patent Data".
Code for paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"
BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.
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