Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
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Updated
Jul 8, 2024 - Python
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
Harmonization of AMR predictor tool outputs
AMR/VF LGT focused bacterial genomics analysis workflow
Antimicrobial resistance prediction app for KBase
Scripts for ARIBA-based gene detection
MTB++ a software developed to predict antimicrobial resistance to 13 antibiotics and 3 families of antimicrobials.
Chromosomal mutations associated with nitrofurantoin resistance in Escherichia coli
Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
Pipelines creating allelic presence-absence matrices from SRST2 and ARIBA results
Conditional Variational Auto-Encoder for generation of synthetic data for Antimicrobial Resistance.
AMRFinderPlus-Matrix contains script for processing the output files of AMRFinderPlus and generating a binary matrix that shows the presence or absence of antibiotic resistance genes, stress response genes, and virulence genes in each sample.
A standardized Python pipeline for comparative analysis of antibiotic resistance genes (ARGs) in bacterial genomes.
Nextflow Wrapper for Mykrobe
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