Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
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Updated
May 21, 2024 - Python
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Bacterial swiss-army-knife pipeline for NGS data
Condense and summarize many results form PADLOC into CSV for heatmaps
genome annotation analyzer for the microbiome analysis
analyzing bacterial genome based ontologies and phylogenomics informativeness
bacterial genome deep learning using keras
interpro domain analyzer
from trinity assembly to deep learning.
A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
🌱 Designing CRISPRi experiments in bacteria
A computational tools for improving the functional annotation of bacterial genomes and the classification of CDSs into cllusters of orthologous groups (COGs). It allows summarizing annotations from different resources to provide a more accurate annotation of genes regarding their assignment into COGs and their categories.
Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)
Snakemake workflow for processing Mycobacterium leprae whole genome sequencing data
Workflow designed for Download, QC, Assemble, Variant calling, and Annotate bacterial WGS in batch
Tool intended to pull out sequences and annotations between insertion sites specified by the user.
bacterial strain identification
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