Taxonomy Classifer Using Gene Sequence.
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Updated
Aug 13, 2017 - Python
Taxonomy Classifer Using Gene Sequence.
Python scripts for Bioinformatics applications
Python implementation of bioinformatics algorithms and useful functions.
simple python script for bioinformatics
Contains solutions to problems posted on rosalind.info
A bioinformatics script to analyse GFF/GTF files
bacterial strain identification
A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
Determines the most probable sequences missing from a greater set of genomic reads.
This is a parser written to extract data from a GenBank file and insert it into an SQL database. This is part of a project that I did for my MSc in Bioinformatics.
Coord2gene is a simple Python script that converts genomic coordinates to gene names. Useful for mapping SNPs to genes, and optimized for speed.
Bioinformatics scripts in Python
A script to convert multiple SEQ files to a singular FASTA file
gmx_wheel+ is a tool for analysing and visualizing the orientation of helical antimicobial peptides based on molecular dynamics simulations
Software tools to extract mRNA's features from a list of ENSEMBL gene IDs.
Script to Automate removal of HETATOMS
A script which counts the gaps in FASTA DNA sequences and reports their proportions in a CSV file
Extract raw file specific spectra from an unassigned spectra file (.mgf) from Proteome Discoverer and generate new .mgf files specific to raw files
This program calculates the conservation index of a set of DNA or protein sequences
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