A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 1.4
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Updated
May 10, 2019 - C++
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 1.4
summarize and visualize the genotypes categories per sample in a VCF file
A kernel-based distance calculator for protein sequences.
SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
The repo was not under development. Check out angsd toolkit for low depth data analyses.
A bioinformatics tool, named Sequence Similarity 3D
fast and comprehensive k-mer counting package
MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
Bioinformatic Tool for pre-processing NGS technologies outputs
A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
Common bioinformatic tools in C/C++
BLAST without Sys.Call()
A tool for mass spectrometry data analysis.
Split a multifasta file into many fasta files containing a single sequence, or extract a list of sequences/contigs. Supports compressed input and output files.
PARamrfinder is a high performance parallel tool to predict allele-specific DNA methylation (ASM) in mammals in the absence of SNP data.
KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
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