FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Accurate, resource-frugal and deterministic DNA sequence classifier.

TAXnomic Profile Aggregation and STAndardisation

This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

🐴 CLinically Okay Metagenomic Pipeline 🐴

Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species

discover-virome: identify and quantify viruses from metagenomic assemblies

subset and spaced seed design tool

Accurate taxonomic classification and abundance profiling using locality-sensitive hashing.

Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences

XGBoost implementation for bacteria family identification

The impact of transitive annotation on the training of taxonomic classifiers