Profile RNA-seq data using published TB gene signatures
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Updated
May 7, 2024 - R
Profile RNA-seq data using published TB gene signatures
Mendelian Randomization with Biomarker Associations for Causality with Outcomes
A comprehensive R package for label-free proteomics data analysis and modeling
Incidence Estimation Tools
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
Ensemble Model Biomarker Analysis R package
🔎 Web-based Tool for Interacting with FOBI Ontology
Omics BioAnalytics - RShiny web app for bioinformatics analyses
This package contains a Rshiny webtool developed to allow the calculation of the metabolic predictors developed by the groups of MOLEPI and LCBC (LUMC), from raw Nightingale Health 1H-NMR metabolomics data.
Fit Poolwise Regression Models
GENEPARK is a large study that aimed for finding blood-based biomarkers Parkinson's disease. Here we provide the R code for reproducing the main results of the project.
Code and data to support doi:10.1136/jitc-2020-001506
Predicting eczema severity with biomarkers using a Bayesian state-space model
Univariate conditional average treatment effect estimation for predictive biomarker discovery
Code for analysis of metabolomics data for DMD natural history study
R Code and website for ongitudinal Fecal Calprotectin Profiles Characterize Disease Course Heterogeneity in Crohn’s Disease by Constantine-Cooke et al.
Source code for "Overexpression of CRNDE in glioblastoma is a poor survival prognosis biomarker" paper
Gene Polymorphisms Among Plasmodium vivax Geographical Isolates and the Potential as New Biomarkers for Gametocyte Detection
CimpleG, an R package to find (small) CpG signatures.
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