My bachelors thesis on predicting relative protein-protein binding affinity changes upon point mutations using graph neural networks.
-
Updated
Sep 20, 2022 - Python
My bachelors thesis on predicting relative protein-protein binding affinity changes upon point mutations using graph neural networks.
genomics, biochemistry, biotechnology, cell biology, biophysics, ecology
Estimating the main parameters of a Worm-Like Chain Molecule from Force-Extension Measurements.
Tools for data generation and data analysis for the eLife research article - "The solubility product extends the buffering concept to heterotypic biomolecular condensates"
Summer Project on Stokes flow in Biophysics
simulation of the growth of a vascular network under blood flow
A simple fluorescence microscopy simulation and visualization tool
Reconstructs a simulatable 3D mesh from in-vivo CARTO mapping data
Molecular Dynamics - Simulation Analysis and Preparation Suite
Ion Homeostasis in Spatially Polarized Excitable Cells: An Approach to Maximize Endogenous Electric Fields
A Python package designed for analyzing the internal degrees of freedom within molecular structures, focusing particularly on membrane proteins. It conducts statistical analyses, providing deep insights into the dynamics and flexibility of molecular interactions. Ideal for finding the most flexible regions within a protein.
A simple python module for reading, writing, fetching and manipulating biomolecules
Analysis tools for Vertex Models of Epithelia, Path Entropy
A library containing all the biopolymer matrix topology analyses published by the Biological Physics Group, (BIP), Peter Debye Institute, University Leipzig.
Program to calculate the most probable path between two equilibrium states of a biomolecule
Tool for detecting abrupt step changes in noisy signals
Final Project for Graduate Level Course: Computational Modelling in Biophysics
Repository for Pachter Lab Biophysics
A wrapper for analysing circular dichroism spectroscopy data
Add a description, image, and links to the biophysics topic page so that developers can more easily learn about it.
To associate your repository with the biophysics topic, visit your repo's landing page and select "manage topics."