Bisulfite-seq data Workflow Automation Software and Protocols
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Updated
Sep 6, 2019 - Shell
Bisulfite-seq data Workflow Automation Software and Protocols
A simple python script to find the amount of methylation after bisulfites sequencing from .fasta files
Tools to analyse allele-specific methylation using bisulfite sequencing data
Lecture given in University of Pittsburgh course Genomics (BIOSC 1250) related to the epigenetic-basis for PTSD, how methylation of cytosines is detected and how epigenetic modifications of PTSD are hereditary.
Analyze Whole Genome Bi-Sulfite Sequencing for Grape evolution in response to grafting
Snakemake workflow for the processing of EMseq data
Environmental and genealogical signals on DNA methylation in a widespread apomictic dandelion lineage
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
PARamrfinder is a high performance parallel tool to predict allele-specific DNA methylation (ASM) in mammals in the absence of SNP data.
Pipeline for BS-Seq data based on snakemake
A Nextflow pipeline to align and quantify Methylation (Bisulfite) sequencing data.
Bisulfite Sequencing Virus integration Finder
bisulfite sequencing pattern analysis tool
A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis
Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).
a SGE, python, implementation of the ENCODE consortium whole genome bisulfite sequencing pipeline.
Targeted Amplicon Bisulfite Sequencing Analysis Tool
Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
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