Cell tracking and segmentation software
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Updated
Jul 2, 2024 - Python
Cell tracking and segmentation software
A python algorithm for tracking cells in 3D time lapse images.
An R package for the analysis and interpretation of cell migration tracks.
Bayesian multi-object tracking
A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy
End to end cell tracking code for TUBITAK 119e578 project.
Track and lineage visualization with btrack and Napari 🌲
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
Analysis for cell competition phd project
Explainable AI model of cell behavior
Harness deep learning and bounding boxes to perform object detection, segmentation, tracking and more.
MPM: Joint Representation of Motion and Position Map for Cell Tracking
Distance-transform-prediction-based segmentation method used for our submission to the 6th edition of the ISBI Cell Tracking Challenge 2021 as team KIT-Sch-GE (2) (now KIT-GE (3)).
Tracking cell and count mRNA inside each cell
An R package for tracking cells and analyzing their trajectories
Research project to track movement of Hepatoceullar Carcinoma cells.
Official Implementation of our paper on Cell Tracker Algorithm for NPC Cell maturation profile understanding.
Knime workflow to facilitate segmentation and tracking in 3D + time cell images using the TGMM 1.0 software by the Keller lab (https://www.janelia.org/lab/keller-lab).
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