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chromatin-accessibiity

Here are 5 public repositories matching this topic...

DarkAdin / RNAseq-ATACseq

scRNA-seq and scATAC-seq utilities

rna-seq atac-seq transcriptomics single-cell single-cell-rna-seq signac single-cell-atac-seq seurat chromatin-accessibiity scenic

Updated Jun 10, 2024
R

Krebslabrep / Kreibich_2023_5mC_at_enhancers

Analysis of Single Molecule Footprinting (SMF) data for the analysis of DNA methylation, chromatin accessibility and TF binding. The repository contains all primary code to reproduce the main analyses for the publication "Single molecule footprinting identifies context-dependent regulation of enhancers by DNA methylation" (Kreibich et al., 2023)

transcription-factors epigenetics dna-methylation chromatin-accessibiity single-molecule-footprinting

Updated Feb 29, 2024
R

UcarLab / BiFET

A robust statistical test for TF footprint data analyses

dnase-seq r bioconductor statistical-tests atac-seq transcription-factor-binding footprinting chromatin-accessibiity

Updated Mar 11, 2020
R

jeongdo801 / scNOVA

scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis

cancer-genomics structural-variation nucleosome chromatin-accessibiity single-cell-multiomics

Updated Jul 29, 2023
R

wbaopaul / scATAC-pro

A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data

bioinformatics pipeline atac-seq single-cell chromatin-accessibiity

Updated Aug 19, 2024
R

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