cnv
Here are 20 public repositories matching this topic...
Bioinformatics CNV Detection with Random Forest Model
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Dec 29, 2019 - Python
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
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Aug 18, 2022 - Python
The performance of individual CNV detection software and state-of-the-art sequencing. All analyses were performed using the Python and R programming languages.
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Feb 23, 2023 - Python
ClassifyCNV: a tool for clinical annotation of copy-number variants
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Jun 26, 2023 - Python
Hidden Markov Model based Copy number caller
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Oct 12, 2023 - Python
AWS Lambda and S3 implementation of XCNV
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Jun 18, 2024 - Python
A high-accuracy tool for integrating scDNA-seq and scRNA-seq data
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Nov 12, 2023 - Python
WES Analysis scripts for "Immune determinants of response to neoadjuvant chemo-radiation in esophageal adenocarcinoma" publication
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Nov 20, 2023 - Python
An adaptable method for analyzing SNVs, INDELs, and CNVs from Whole Exome Sequencing (WES) data, emphasizing germline variants.
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Feb 29, 2024 - Python
A Snakemake pipeline for copy number variant calling without normal tissue samples
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Jun 19, 2024 - Python
A repo that contains miscellaneous Python/C++ modules/programs, a standalone Python module 'palos' by the yfish group (can be installed by pip).
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Jul 2, 2024 - Python
Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
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Jul 7, 2024 - Python
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
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Jul 8, 2024 - Python
In this repository I backup the pipelines I write for the project I am involved
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Jul 12, 2024 - Python
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