TCR Enrichment Analysis (TEA) Webtool
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Updated
Apr 6, 2019 - R
TCR Enrichment Analysis (TEA) Webtool
Python Version of CERENKOV paper (ACM-BCB 2017)
Analysis code used for Rabadam G, Neely J, et al. JCI Insight, 2024.
This repository contains scripts and results for my group in the 2016-2017 Computational Biology class offered jointly through the Maine School of Science and Mathematics (my high school) and the Jackson Laboratories. This research project uses a mouse intercross provided by the Attie Labratory at the University of Wisconsin - Madison. We are us…
Computational Genomics Final Project: Analysis of RNAseq data to determine differentially expressed genes in Dengue and Zika virus infection.
My final year Natural Sciences Interdisciplinary Project.
Analysis of student performance classifying stages of mitosis in hiPSCs.
A technical biomedical informatics and computational biology knowledge base commons
A classifier prototype that predicts cancer cell line sex and genotype from gene-based sequencing read counts.
APSiC: Analysis of Perturbation Screens for the Identification of Novel Cancer Genes
Using Single Cell Transcriptomics to Analyze how COVID Effects our Heart
Gene Polymorphisms Among Plasmodium vivax Geographical Isolates and the Potential as New Biomarkers for Gametocyte Detection
Code bank for analysis performed in the manuscript" "The capacity to produce hydrogen sulfide (H2S) via cysteine degradation is ubiquitous in the human gut microbiome"
Computational biology functions I made to help in my analyses.
RNAseq pipeline for Pasini's lab written in snakemake
R code for the PBS users for generating and working on the PBS clusters
R package with common use scripts for transcriptomics analysis
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