Tools for accessing data from a catmaid server
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Updated
Jan 19, 2017 - Python
Tools for accessing data from a catmaid server
Code for MICCAI 2017 paper
MICrONS TA3 connectivity database
Volume Image Environment
We provide a method to extract the tractographic features from structural MR images for patients with brain tumor
JS biomedical 3D image stack. Fast CPU rendering. Easy web app integration.
Code and data used in Bordt et al (2019) Synaptic inputs and connectivity of a sparsely branched ganglion cell in rabbit retina
Semantic segmentation architectures for connectomics.
Flood Fill Network for 3d Electron Microscopy volume neuron segmentation. Adapt from google FFN-master add notes and custom variation and parallelization (for windows and our retina & LGN data)
Tools and wrappers for skeletonization.
OG 2019 - Project 09: Visualizing brain connectomics using D3.js
A curated list of resources, papers and articles for 3D volumetric segmentation of connectomics in EM Images.
Access to DVID API
Virtual Fly Brain blog and documentation site
Code for "Bayesian reconstruction of memories stored in neural networks from their connectivity" https://arxiv.org/abs/2105.07416
Visualize neural networks into a heirarchial graph using networkx. Weights and signs will be respected.
Reverse script for CREMI Benchmark
Analysis code for connecting time-series properties of BOLD dynamics to connectivity properties using human fMRI and DWI data from HCP
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