A Framework for IMS-MS Raw Data Processing written in Rust and Python.
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Updated
Jul 11, 2024 - Rust
A Framework for IMS-MS Raw Data Processing written in Rust and Python.
Code building for workflow package
This repository is associated with a bioRxiv preprint describing the MacCoss laboratory's quality control measures for sample preparation, system suitability, and assessing results.
MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
A software tool for omics-agnostic automated quality control of mass spectrometry data.
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
A NextFlow pipeline for chromatogram library DIA proteomics workflows
CRISP-DIA is a software for liquid chromatography-tandem mass spectrometry (LC-MS/MS) based proteomics data processing, which enables accurate and reliable quantification for data-independent acquisition (DIA) proteomics.
Reproducibility repo for Shashikadze et al. "Multi-omics profiling of lungs from genetically diabetic pigs reveals reduced ALOX15 levels and impaired eicosanoid switching as mechanisms contributing to a proinflammatory milieu".
Size-Exclusion Chromatography Algorithmic Toolkit
Extract the identified peptides and proteins from spectral library search of DIA proteomic data in Skyline
Composite Spectra Analysis
A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
Extracts the features of peptide spectral library for better understanding and its efficient usage in DIA database search
Avant-garde (AvG) is a new tool to refine Data-Independent Acquisition (and Parallel Reaction Monitoring) by removing interfered transitions, adjusting integration boundaries and scoring peaks to control the FDR.
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