Differential Gene Expression analysis in R using DESeq2

Tuberculosis and the microbiome

https://foreverstas.github.io/DGE_workshop_rus/

RNA-Seq Data Analysis in R: From Raw Counts to Differential Expression Analysis

Transcriptional differences between Miscanthus hybrids with contrasting starch and sucrose concentrations and biomass production

Package for the recount workshop for BioC2017

Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R

A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma

Developmental timeseries of the reef-building coral Montipora capitata under predicted low and extreme low ocean acidification scenarios

single cell and bulk RNASeq analysis scripts

NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization