Implementation of LAVA algorithm in Seq language.
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Updated
Jan 14, 2021 - Python
Implementation of LAVA algorithm in Seq language.
Jupyter notebooks for BFG-PCA related simulation and analysis.
LpSIM is a virtual platform for simulating the different stages of the Illumina sequencing library preparation workflow and the possible artefacts that may be introduced at each stage.
This is a web application to count the nucleotides composition in a DNA sequence sample.
As raises cresceram da Árvore mãe para ligar todos nós, e as raizes cresceram , as raizes cresceram . Minha dor sua redenção meu sofrimento sua Salvação, Louvadas as Árvores.
DNA sequencing with greedy algorithm
Clustering DNA reads by barcodes from raw reads. Old code written for my master-thesis.
Counts all SNP mutations in .map file
A long read nanopore genome assembly and error correction pipeline
The snakyVC pipeline is designed for efficiently and parallelly executing variant calling on next-generation sequencing (NGS) whole-genome datasets.
🧩 Representation of Small Genomes using the Chaos Game.
A collection of short and sweet python scripts I wrote for my dad that automate steps in the analysis of fasta files.
In this repository I backup the pipelines I write for the project I am involved
DNA - CS50
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
Python based script which enables you to translate DNA or RNA, targeted towards high school biology. U=A G=C and exc.
Jupyter notebooks for BFG-PCA related simulation and analysis.
A utility for splitting mixed origin NGS reads with secondary or alt mappings
Data Structures And Algorithms
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