📈 Markdown files and R code for BIOS331 (General Ecology) modeling assignments.
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Updated
Mar 31, 2020 - R
📈 Markdown files and R code for BIOS331 (General Ecology) modeling assignments.
This is a quick script using BlackMarble R package. It is user friendly for our lab purposes.
School of ecology package for teaching ecological tasks, algorithms and model fitting.
The microbial Lag duration calculator code (package miLAG and shiny)
R functions for data analytics which I created for SANBI. The function analyzes GPS waypoints and tracks and estimates a field survey's efficiency. Part of the function also creates visual data summaries.
Code for manuscript "Time-varying effects of local weather on behavior and probability of breeding deferral in two Arctic-nesting goose populations" (Oecologia; 10.1007/s00442-022-05300-x)
Workflow for preparing ecoacoustic species annotations and raster layers to use in species distribution modelling, with R
Mathematical model(s) for the symbisis between Allivibrio fisheri and Euprymna scalopes
Open access repository for (some) data-sets, reproducible analyses, conference slides and manuscript for a publication based on my BSc Hons project (in press in Journal of Biogeography).
A package written for my PhD thesis research. The one can perform reconstruction of the climatic niche of a species using this. Documentation not finished yet.
Codes used for spatial analysis incorporating WORLDCLIM open source climate data variables
R code to reproduce analyses in "Rapid winter warming could disrupt coastal marine fish community structure" (Clark et al, Nature Climate Change, 2020)
Explainable Species Distribution Modeling
Bayesian Priors for Matrix Population Models
Agent-based metabolic modelling of microbial communities in time and continuous µ-meter-scale space
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