Mathematical Modeling of Infectious Disease Dynamics
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Updated
May 16, 2024 - R
Mathematical Modeling of Infectious Disease Dynamics
Unified COVID-19 Dataset
R Package for Analyzing John Snow's 1854 Cholera Map
Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis."
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources
Bayesian spatial analysis
Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.
COVID-19 Pandemic Data R Package
Report templates and helper functions for applied epidemiology
A framework for data-driven stochastic disease spread simulations
Source code for the EpiEstim app.
R Package for individual based epidemiological models
Analysis and visualization of Taiwan’s COVID-19 data
R package for epigraphdb
Network Models of HIV Transmission Dynamics among MSM and Heterosexuals
R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters
A magyarországi koronavírus járvány valós idejű, kvantitatív epidemiológiája.
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
R interface to the CDC National Public Health Tracking Network API
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