Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
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Updated
Mar 27, 2020 - Shell
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
simple and convenient program to convert fasta sequences to fastq sequences
Calculate fastq reads and sequencing coverage
Nextflow script for processing WGS data
less like viewer for fastq files
Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.
Pipeline to assemble paired-end sequencing reads, annotate the resulting contigs, compare the genome content across sequences and determine the variants (SNPs).
A sorting method for encoding metagenomic data
Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.
Download fastqs or supplementary files from GEO and upload to hca-util bucket
a pacbiohifi read check for the quick view of the read types.
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