Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
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Updated
Aug 23, 2019 - Python
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
Count your fastq-formatted rna-seq reads with Salmon
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Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …
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