Very fast method to read number of events from some / all FCS files in a directory
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Updated
Sep 4, 2020 - R
Very fast method to read number of events from some / all FCS files in a directory
An R package for simple, customizable binning of flow cytometric data
Plots the MDS (Multi-dimensional scaling) of 3 or more FCS files.
Correction for flow cytometry histograms when part of the population is in noise
R Script to plot the average event rate in flow or mass cytometry (FCS) files
batch-titration is a container that allows for one or more fcs files to be automatically processed (using AWS Batch or other runners). It produces an html document.
Data processing for flow cytometry and LEGENDplex cytokine data described in "Decidual leukocytes respond to African lineage Zika virus infection with mild anti-inflammatory changes during acute infection in rhesus macaques
Opens two or more FCS files and creates new files that contain only the Channels common to all.
Plots the NRS (non-redundancy score) of selected markers from one or more FCS files
Conversion from light scattering measured by SeaFlow to carbon per cell
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
Calibration of SeaFlow's Virtual Core
Retrieve index sorted data and visually explore .fcs data files.
cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indice…
Bayesian models used in CD56bright natural killer cells preferentially kill proliferating CD4+ T cells
Data for Imaging Flow Cytometry
Basic functionality to create circos plot that shows concurrent positivity of flow cytometry markers.
This repo is deprecated. Use https://github.com/plantarum/flowPloidy instead!
Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.
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