The Multi-Modality Visualization Tool (MMVT) is built for researchers who wish to have a better understanding of their neuroimaging anatomical and spatio-temporal data

TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline

KUL/UZ NeuroImaging Suite. A set of tools for brain and spine MRI analysis.

plot fMRI ROIs with different colors

A sample neuroimaging pipeline for the fMRI data collected by the Aging Brain Cohort.

legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm

fMRIPrep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to variations in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

CVNR Imaging Core Issues List

Singularity image to download data from XNAT servers.

Make macros for doing seed-based correlation analysis using AFNI with any given set of groups and covariates. Uses AFNI 3dttest++.

shell script package for (pre)processing fmri data

Misc scripts for MADC fMRI images transfers and preprocessing

fMRI data and code associated with the publication titled, "The cerebellum is sensitive to the lexical properties of words during spoken language comprehension" published in Neurobiology of Language on October 30th, 2023

Package to create group-averaged functional connectivity map for a list of ROI coordinates

Explore the neural basis of cognitive control with this repository's in-depth analysis of the Flanker Dataset using fMRI. Using bash scripting to streamline preprocessing and ROI analysis, while incorporating R scripts to explore brain region activity during the task.

Scripts and pipeline for the handling of scripts from DICOMS to 4DFP and then analysis.

Structural and functional MRI data analysis scripts

This is the official C-PAC (Configurable Pipeline for the Analysis of Connectomes) brainlife.io app. Currently this app runs either the default pipeline or one of our preconfigured pipelines.