Aphrocallistes vastus genome

A comparative annotation toolkit (CAT) pipeline for 304 fly genomes.

Arche: a functional-optimized annotator for microbial meta(genomes)

Scripts and notes related to the manuscript: Stuart KC & Edwards RJ et al. 2022. Transcript- and annotation-guided genome assembly of the European starling. Molecular Ecology Resources, doi.org/10.1101/2021.04.07.438753. † joint first author

Scripts used by George S. Long

Patch for LRSDAY v1.6 for Debian-based and SUSE-based OS.

This repository contains scripts used to process the metagenomic and 16S rRNA gene amplicon data obtained from biological soil crusts in at the Avdat site in the Negev Desert, Israel. The results and discussion of the analysis are published in the manuscript "Distribution of mixotrophy and desiccation survival mechanisms across microbial genomes…

De novo genome assembly of subset of the durian fruit genome.

pacbiohifi sequencing genomes analysis using the verkko, hifiasm and the genomeasm4pg.

Teaching Material for Course "Computational Bioscience & Machine Learning 2021 - Genome Assembly"

Scripts for Hill et al. (2023) doi:10.1093/gbe/evad038 🌿

Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.

Genomics Part of the KAUST High Throughput Sequencing Workshop 2019

This is a template for all assembly projects. Please read the instructions below on how to use it.

Donut: automated Circos visualization of multiple fasta files within a docker image

DEPRECATED: Use Cenote-Taker 3 instead

SLURM-ready bash scripts to run the complete REPET pipeline

A Dockerfile and associated tools for deploying containerized InterProScan5.