Viral genomics analysis pipelines
-
Updated
Nov 3, 2020 - Python
Viral genomics analysis pipelines
Tools for fast and flexible genome assembly scaffolding and improvement
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
⛓ Correct misassemblies using linked AND long reads
Long-reads Gap-free Chromosome-scale Assembler
Learning to untangle genome assembly with graph neural networks.
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
⛓️ Construct a Physical Map from Linked Reads
Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
B73Ab10 genome assembly methods
An algorithm for centromere assembly using long error-prone reads
CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
snakemake long read assembly pipeline
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
Iterative Organellar Genome Assembly
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
Add a description, image, and links to the genome-assembly topic page so that developers can more easily learn about it.
To associate your repository with the genome-assembly topic, visit your repo's landing page and select "manage topics."