Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
-
Updated
Jun 20, 2017 - Shell
Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
A pipeline for viral identification from metagenomic samples
example genomics workflow for student training
Genomics Part of the KAUST High Throughput Sequencing Workshop 2019
genome assembly snakemake pipeline
Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies
This repository contains scripts used to process the metagenomic and 16S rRNA gene amplicon data obtained from biological soil crusts in at the Avdat site in the Negev Desert, Israel. The results and discussion of the analysis are published in the manuscript "Distribution of mixotrophy and desiccation survival mechanisms across microbial genomes…
Teaching Material for Course "Computational Bioscience & Machine Learning 2021 - Genome Assembly"
Shell script for extracting sequences from high-degree nodes in metagenomic assembly graphs
Assembly of chloroplast genome using long-reads and short-reads for Genomics Course 2021 (MSc Bioinformatics for Computational Genomics)
Scripts and notes related to the manuscript: Stuart KC & Edwards RJ et al. 2022. Transcript- and annotation-guided genome assembly of the European starling. Molecular Ecology Resources, doi.org/10.1101/2021.04.07.438753. † joint first author
Analysis workflow to generate fungal assemblies, generate gene structural and functional annotations
Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming contigs and converting FASTQ to FASTA. Written in Bash. All in one place.
SARS-CoV-2 Genome Assembler
Scripts for Hill et al. (2023) doi:10.1093/gbe/evad038 🌿
Patch for LRSDAY v1.6 for Debian-based and SUSE-based OS.
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
Experimental tool to taxonomically classify microbial genomes in a few minutes
Add a description, image, and links to the genome-assembly topic page so that developers can more easily learn about it.
To associate your repository with the genome-assembly topic, visit your repo's landing page and select "manage topics."