The generic genome-scale metabolic model of Homo sapiens
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Updated
Sep 22, 2024 - MATLAB
The generic genome-scale metabolic model of Homo sapiens
The consensus GEM for Saccharomyces cerevisiae
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
COMMIT: Community-dependent gap-filling considering metabolite leakage
TRIMER is a package for building integrated metabolic–regulatory models base on Bayesian network. TRIMER can be used for knockout phenotype prediction and knock flux prediction.
A container for all enzyme constrained models created by GECKO.
IgemRNA is an open access toolbox for transcriptome data statistical and biochemical network topology-based analysis. IgemRNA was developed in the MATLAB environment in order to take advantage of the up-to-date and most commonly distributed GSM modelling tool Cobra Toolbox 3.0 and spreadsheet file capabilities.
DeltaFBA is a set of MATLAB functions that employs constraint-based modeling, in combination with differential gene expression data, to evaluate changes in the intracellular flux distribution between two conditions.
Genome-scale model of Yarrowia lipolytica.
Integration of cofactors with proteome-constrained model of Saccharomyces cerevisiae
Supplementary code and results from doi:10.1101/2020.02.20.957662
Genome-scale metabolic model of Rhodotorula toruloides
Genome-scale metabolic model of Cordyceps militaris
The consensus GEM for Kluyveromyces marxianus
Collection of scripts for enhancing humanGEM based models with kinetic and proteomics constraints and specialized simulation utilities.
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